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Rhomboid-mediated cleavage of the immune receptor XA21 protects grain set and male fertility in riceTo maintain growth and to successfully reproduce, organisms must protect key functions in specific tissues, particularly when countering pathogen invasion using internal defensive proteins that may disrupt their own developmental processes. The rice immune receptor XA21 confers race-specific resistance againstXanthomonas oryzaepv.oryzae, which causes the deadly disease bacterial leaf blight. Here, we demonstrate that XA21 is cleaved by the rhomboid-like protease OsRBL3b, likely within its transmembrane domain.OsRBL3bmRNA transcripts are preferentially expressed in rice spikelets. Rice plants expressingXa21but lacking a functionalOsRBL3bdisplayed impaired anther dehiscence and pollen viability, resulting in male sterility and yield reduction with high levels of XA21 protein present in spikelets during anthesis. In leaves,osrbl3bmutants expressing XA21 had normal levels of this resistance protein and disease immunity. This balance between reproduction and disease resistance through the specific expression of a rhomboid protease may be key to limiting the detrimental effects of an active immune response and may be useful in future for genetic improvement of crops.more » « less
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Understanding an online argumentative discussion is essential for understanding users' opinions on a topic and their underlying reasoning. A key challenge in determining completeness and persuasiveness of argumentative discussions is to assess how arguments under a topic are connected in a logical and coherent manner. Online argumentative discussions, in contrast to essays or face-to-face communication, challenge techniques for judging argument relevance because online discussions involve multiple participants and often exhibit incoherence in reasoning and inconsistencies in writing style. We define relevance as the logical and topical connections between small texts representing argument fragments in online discussions. We provide a corpus comprising pairs of sentences, labeled with argumentative relevance between the sentences in each pair. We propose a computational approach relying on content reduction and a Siamese neural network architecture for modeling argumentative connections and determining argumentative relevance between texts. Experimental results indicate that our approach is effective in measuring relevance between arguments, and outperforms strong and well-adopted baselines.Further analysis demonstrates the benefit of using our argumentative relevance encoding on a downstream task, predicting how impactful an online comment is to certain topic, comparing to encoding that does not consider logical connection.more » « less
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Abstract Classical T Tauri stars (CTTSs) are young, low-mass stars that accrete material from their surrounding protoplanetary disk. To better understand accretion variability, we conducted a multiepoch, multiwavelength photometric monitoring campaign of four CTTSs, TW Hya, RU Lup, BP Tau, and GM Aur, in 2021 and 2022, contemporaneous with Hubble Space Telescope UV and optical spectra. We find that all four targets display significant variability in their light curves, generally on days-long timescales (but in some cases year-to-year), often due to periodicity associated with stellar rotation and to stochastic accretion variability. There is a strong connection between mass accretion and photometric variability in all bands, but the relationship varies per target and epoch. Thus, photometry should be used with caution as a direct measure of accretion in CTTSs.more » « less
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Abstract Polyploidy (genome duplication) is a pivotal force in evolution. However, the interactions between parental genomes in a polyploid nucleus, frequently involving subgenome dominance, are poorly understood. Here we showcase analyses of a bamboo system (Poaceae: Bambusoideae) comprising a series of lineages from diploid (herbaceous) to tetraploid and hexaploid (woody), with 11 chromosome-level de novo genome assemblies and 476 transcriptome samples. We find that woody bamboo subgenomes exhibit stunning karyotype stability, with parallel subgenome dominance in the two tetraploid clades and a gradual shift of dominance in the hexaploid clade. Allopolyploidization and subgenome dominance have shaped the evolution of tree-like lignified culms, rapid growth and synchronous flowering characteristic of woody bamboos as large grasses. Our work provides insights into genome dominance in a remarkable polyploid system, including its dependence on genomic context and its ability to switch which subgenomes are dominant over evolutionary time.more » « less
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Abstract The classical T Tauri star (CTTS) stage is a critical phase of the star and planet formation process. In an effort to better understand the mass accretion processes, which can dictate future stellar evolution and planet formation, a multiepoch, multiwavelength photometric and spectroscopic monitoring campaign of four CTTSs (TW Hya, RU Lup, BP Tau, and GM Aur) was carried out in 2021 and 2022/2023 as part of the Outflows and Disks around Young Stars: Synergies for the Exploration of ULLYSES Spectra program. Here we focus on the Hubble Space Telescope (HST) UV spectra obtained by the HST Director’s Discretionary Time UV Legacy Library of Young Stars as Essential Standards (ULLYSES) program. Using accretion shock modeling, we find that all targets exhibit accretion variability, varying from short increases in accretion rate by up to a factor of 3 within 48 hr to longer decreases in accretion rate by a factor of 2.5 over the course of 1 yr. This is despite the generally consistent accretion morphology within each target. Additionally, we test empirical relationships between accretion rate and UV luminosity and find stark differences, showing that these relationships should not be used to estimate the accretion rate for an individual target. Our work reinforces that future multiepoch and simultaneous multiwavelength studies are critical in our understanding of the accretion process in low-mass star formation.more » « less
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Abstract Classical T Tauri Stars (CTTSs) are highly variable stars that possess gas- and dust-rich disks from which planets form. Much of their variability is driven by mass accretion from the surrounding disk, a process that is still not entirely understood. A multiepoch optical spectral monitoring campaign of four CTTSs (TW Hya, RU Lup, BP Tau, and GM Aur) was conducted along with contemporaneous Hubble Space Telescope (HST) UV spectra and ground-based photometry in an effort to determine accretion characteristics and gauge variability in this sample. Using an accretion flow model, we find that the magnetospheric truncation radius varies between 2.5 and 5R⋆across all of our observations. There is also significant variability in all emission lines studied, particularly Hα, Hβ, and Hγ. Using previously established relationships between line luminosity and accretion, we find that, on average, most lines reproduce accretion rates consistent with accretion shock modeling of HST spectra to within 0.5 dex. Looking at individual contemporaneous observations, however, these relationships are less accurate, suggesting that variability trends differ from the trends of the population and that these empirical relationships should be used with caution in studies of variability.more » « less
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SUMMARY We report finite-frequency imaging of the global 410- and 660-km discontinuities using boundary sensitivity kernels for traveltime measurements made on SS precursors. The application of finite-frequency sensitivity kernels overcomes resolution limits in previous studies associated with large Fresnel zones of SS precursors and their interferences with other seismic phases. In this study, we calculate the finite-frequency sensitivities of SS waves and their precursors based on a single-scattering (Born) approximation in the framework of travelling-wave mode summation. The global discontinuity surface is parametrized using a set of triangular gridpoints with a lateral spacing of about 4°, and we solve the linear finite-frequency inverse problem (2-D tomography) based on singular value decomposition (SVD). The new global models start to show a number of features that were absent (or weak) in ray-theoretical back-projection models at spherical harmonic degree l > 6. The thickness of the mantle transition zone correlates well with wave speed perturbations at a global scale, suggesting dominantly thermal origins for the lateral variations in the mantle transition zone. However, an anticorrelation between the topography of the 410-km discontinuity and wave speed variations is not observed at a global scale. Overall, the mantle transition zone is about 2–3 km thicker beneath the continents than in oceanic regions. The new models of the 410- and 660-km discontinuities show better agreement with the finite-frequency study by Lawrence & Shearer than other global models obtained using SS precursors. However, significant discrepancies between the two models exist in the Pacific Ocean and major subduction zones at spherical harmonic degree >6. This indicates the importance of accounting for wave interactions in the calculations of sensitivity kernels as well as the use of finite-frequency sensitivities in data quality control.more » « less
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